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- MSL Objects
- MSL Objects:ALNReader
- MSL Objects:Atom
- MSL Objects:Atom3DGrid
- MSL Objects:AtomAngleRelationship
- MSL Objects:AtomBondBuilder
- MSL Objects:AtomContainer
- MSL Objects:AtomDihedralRelationship
- MSL Objects:AtomDistanceRelationship
- MSL Objects:AtomGeometricRelationship
- MSL Objects:AtomGroup
- MSL Objects:AtomPointerVector
- MSL Objects:AtomSelection
- MSL Objects:AtomicPairwiseEnergy
- MSL Objects:BBQTable
- MSL Objects:BBQTableReader
- MSL Objects:BBQTableWriter
- MSL Objects:BackRub
- MSL Objects:CCD
- MSL Objects:CartesianGeometry
- MSL Objects:CartesianPoint
- MSL Objects:Chain
- MSL Objects:CharmmAngleInteraction
- MSL Objects:CharmmBondInteraction
- MSL Objects:CharmmDihedralInteraction
- MSL Objects:CharmmEEF1Interaction
- MSL Objects:CharmmEEF1ParameterReader
- MSL Objects:CharmmEEF1RefInteraction
- MSL Objects:CharmmElectrostaticInteraction
- MSL Objects:CharmmEnergy
- MSL Objects:CharmmImproperInteraction
- MSL Objects:CharmmParameterReader
- MSL Objects:CharmmSystemBuilder
- MSL Objects:CharmmTopologyReader
- MSL Objects:CharmmTopologyResidue
- MSL Objects:CharmmUreyBradleyInteraction
- MSL Objects:CharmmVdwInteraction
- MSL Objects:ChiStatistics
- MSL Objects:CoiledCoils
- MSL Objects:CoordAxes
- MSL Objects:CrystalLattice
- MSL Objects:DeadEndElimination
- MSL Objects:EnergeticAnalysis
- MSL Objects:EnergySet
- MSL Objects:Enumerator
- MSL Objects:EnvironmentDatabase
- MSL Objects:EnvironmentDescriptor
- MSL Objects:File
- MSL Objects:FourBodyInteraction
- MSL Objects:Frame
- MSL Objects:GSLMinimizer
- MSL Objects:HBond LJGaussianInteraction
- MSL Objects:Hash
- MSL Objects:Helanal
- MSL Objects:HelixFusion
- MSL Objects:HelixGenerator
- MSL Objects:IcEntry
- MSL Objects:IcTable
- MSL Objects:Interaction
- MSL Objects:InterfaceResidueDescriptor
- MSL Objects:Line
- MSL Objects:LinearProgrammingOptimization
- MSL Objects:LogicalParser
- MSL Objects:MIDReader
- MSL Objects:Matrix
- MSL Objects:Minimizer
- MSL Objects:MoleculeInterfaceDatabase
- MSL Objects:MonteCarloOptimization
- MSL Objects:MslExceptions
- MSL Objects:MslTools
- MSL Objects:OneBodyInteraction
- MSL Objects:OptionParser
- MSL Objects:PDBFormat
- MSL Objects:PDBFragments
- MSL Objects:PDBReader
- MSL Objects:PDBWriter
- MSL Objects:PSFReader
- MSL Objects:PairwiseEnergyCalculator
- MSL Objects:PhiPsiReader
- MSL Objects:PhiPsiStatistics
- MSL Objects:PolymerSequence
- MSL Objects:Position
- MSL Objects:PotentialTable
- MSL Objects:Predicate
- MSL Objects:PrincipleComponentAnalysis
- MSL Objects:PyMolVisualization
- MSL Objects:PythonMSL
- MSL Objects:Quaternion
- MSL Objects:Quench
- MSL Objects:RandomNumberGenerator
- MSL Objects:RandomSeqGenerator
- MSL Objects:Reader
- MSL Objects:Real
- MSL Objects:RegEx
- MSL Objects:Residue
- MSL Objects:ResiduePairTable
- MSL Objects:ResiduePairTableReader
- MSL Objects:ResidueSelection
- MSL Objects:ResidueSubstitutionTable
- MSL Objects:ResidueSubstitutionTableReader
- MSL Objects:RotamerLibrary
- MSL Objects:RotamerLibraryBuilder
- MSL Objects:RotamerLibraryReader
- MSL Objects:RotamerLibraryWriter
- MSL Objects:SasaAtom
- MSL Objects:SasaCalculator
- MSL Objects:Selectable
- MSL Objects:SelfPairManager
- MSL Objects:SphericalPoint
- MSL Objects:SurfaceAreaAndVolume
- MSL Objects:SurfaceSphere
- MSL Objects:Symmetry
- MSL Objects:System
- MSL Objects:SystemRotamerLoader
- MSL Objects:TBDReader
- MSL Objects:ThreeBodyInteraction
- MSL Objects:Timer
- MSL Objects:Transforms
- MSL Objects:Tree
- MSL Objects:TwoBodyDistanceDependentPotentialTable
- MSL Objects:TwoBodyInteraction
- MSL Objects:UserDefinedEnergy
- MSL Objects:UserDefinedEnergySetBuilder
- MSL Objects:UserDefinedInteraction
- MSL Objects:Writer
- MSL Objects:release
- MSL Objects:triple
- MSL Programs
- MSL Programs::repackSideChains
- MSL Programs:getDihedrals
- MSL Programs:getSelection
- MSL Programs:getSurroundingResidues
- MSL by example
- MSL by example:Regular Expressions
- Main Page
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- Tutorial
- Tutorial::CoiledCoils Bundles
- Tutorial::Mutating Residues
- Tutorial:Check in procedure
- Tutorial:Getting started: Compiling MSL
- Tutorial:Getting started: Compiling MSL with external libraries
- Tutorial:Getting started: Compiling your own programs in MSL
- Tutorial:Getting started: Downloading MSL
- Tutorial:Looping over Chains, Residues, Atoms in the System
- Tutorial:Measuring distances, angles, dihedrals
- Tutorial:Molecular Object Getters
- Tutorial:Molecular alignments
- Tutorial:OptionParser
- Tutorial:Passing atoms between objects: the AtomPointerVector
- Tutorial:Reading a PDB file with the complex molecular object: the System
- Tutorial:Reading a PDB file with the simpler molecular object: the AtomContainer
- Tutorial:Selecting subsets of atoms
- Tutorial:Using regular expression: Selecting sequence motifs of a Chain
- Tutorial: Download CHARMM topology and parameter files
