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- MSL Objects:Residue
- MSL Objects:ResiduePairTable
- MSL Objects:ResiduePairTableReader
- MSL Objects:ResidueSelection
- MSL Objects:ResidueSubstitutionTable
- MSL Objects:ResidueSubstitutionTableReader
- MSL Objects:RotamerLibrary
- MSL Objects:RotamerLibraryBuilder
- MSL Objects:RotamerLibraryReader
- MSL Objects:RotamerLibraryWriter
- MSL Objects:SasaAtom
- MSL Objects:SasaCalculator
- MSL Objects:Selectable
- MSL Objects:SelfPairManager
- MSL Objects:SphericalPoint
- MSL Objects:SurfaceAreaAndVolume
- MSL Objects:SurfaceSphere
- MSL Objects:Symmetry
- MSL Objects:System
- MSL Objects:SystemRotamerLoader
- MSL Objects:TBDReader
- MSL Objects:ThreeBodyInteraction
- MSL Objects:Timer
- MSL Objects:Transforms
- MSL Objects:Tree
- MSL Objects:TwoBodyDistanceDependentPotentialTable
- MSL Objects:TwoBodyInteraction
- MSL Objects:UserDefinedEnergy
- MSL Objects:UserDefinedEnergySetBuilder
- MSL Objects:UserDefinedInteraction
- MSL Objects:Writer
- MSL Objects:release
- MSL Objects:triple
- MSL Programs
- MSL Programs::repackSideChains
- MSL Programs:getDihedrals
- MSL Programs:getSelection
- MSL Programs:getSurroundingResidues
- MSL by example
- MSL by example:Regular Expressions
- Main Page
- Password-less submit to SVN
- PyMOL Python Interface
- Sandbox
- Tests
- ToDo
- Tutorial
- Tutorial::CoiledCoils Bundles
- Tutorial::Mutating Residues
- Tutorial:Check in procedure
- Tutorial:Getting started: Compiling MSL
- Tutorial:Getting started: Compiling MSL with external libraries
- Tutorial:Getting started: Compiling your own programs in MSL
- Tutorial:Getting started: Downloading MSL
- Tutorial:Looping over Chains, Residues, Atoms in the System
- Tutorial:Measuring distances, angles, dihedrals
- Tutorial:Molecular Object Getters
- Tutorial:Molecular alignments
- Tutorial:OptionParser
- Tutorial:Passing atoms between objects: the AtomPointerVector
- Tutorial:Reading a PDB file with the complex molecular object: the System
- Tutorial:Reading a PDB file with the simpler molecular object: the AtomContainer
- Tutorial:Selecting subsets of atoms
- Tutorial:Using regular expression: Selecting sequence motifs of a Chain
- Tutorial: Download CHARMM topology and parameter files