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- 04:25, 15 July 2010 (diff | hist) (0) Tutorial::Mutating Residues
- 04:25, 15 July 2010 (diff | hist) (+110) Tutorial::Mutating Residues
- 04:22, 15 July 2010 (diff | hist) (-53) Tutorial::Mutating Residues
- 04:22, 15 July 2010 (diff | hist) (0) N File:Rotamers.png (current)
- 04:21, 15 July 2010 (diff | hist) (+3) Tutorial::Mutating Residues
- 04:18, 15 July 2010 (diff | hist) (+2,516) N Tutorial::Mutating Residues (Created page with '<font color="red">Tutorial writing in progress</font> This is an example on how to make mutations and add conformations (rotamers) in MSL. This tutorial explains functions in …')
- 04:10, 15 July 2010 (diff | hist) (+68) Tutorial (→NOTE: the tutorial is under construction)
- 22:42, 14 July 2010 (diff | hist) (0) Main Page (→Reference)
- 22:41, 14 July 2010 (diff | hist) (+26) Main Page (→Reference)
- 16:12, 16 May 2010 (diff | hist) (+7) Tutorial::CoiledCoils Bundles (current)
- 16:10, 16 May 2010 (diff | hist) (+61) Tutorial::CoiledCoils Bundles
- 16:08, 16 May 2010 (diff | hist) (0) N File:Coils.png (current)
- 16:08, 16 May 2010 (diff | hist) (+1,534) Tutorial::CoiledCoils Bundles
- 15:51, 16 May 2010 (diff | hist) (+1,318) N Tutorial::CoiledCoils Bundles (Created page with '<font color="red">Tutorial writing in progress, code may not be checked into SVN yet</font> This is an example on how to generate a coiled coil bundle (coiled-coil generation +…')
- 15:28, 16 May 2010 (diff | hist) (+35) Tutorial
- 15:27, 16 May 2010 (diff | hist) (-10) Tutorial
- 03:00, 10 April 2010 (diff | hist) (0) Tutorial
- 02:55, 10 April 2010 (diff | hist) (+458) Tutorial:Measuring distances, angles, dihedrals (current)
- 02:39, 10 April 2010 (diff | hist) (-75) Tutorial:Measuring distances, angles, dihedrals
- 02:29, 10 April 2010 (diff | hist) (+2,156) Tutorial:Measuring distances, angles, dihedrals
- 01:42, 10 April 2010 (diff | hist) (+76) Tutorial
- 01:40, 10 April 2010 (diff | hist) (+793) N Tutorial:Measuring distances, angles, dihedrals (Created page with '<font color="red" > Tutorial writing in progress, errors may exist</font> This is an example on how to measure distances, angles and dihedrals (Includes wrapper functions for me…')
- 01:36, 10 April 2010 (diff | hist) (-8) Tutorial
- 01:36, 10 April 2010 (diff | hist) (+53) Tutorial
- 13:58, 7 April 2010 (diff | hist) (-1) Main Page
- 19:11, 6 April 2010 (diff | hist) (+77) Tutorial:Getting started: Compiling MSL with external libraries
- 19:11, 6 April 2010 (diff | hist) (+160) Tutorial:Getting started: Compiling MSL with external libraries (→How to enable inclusion of the external libraries)
- 19:09, 6 April 2010 (diff | hist) (+186) Tutorial:Getting started: Compiling MSL with external libraries (→GLPK)
- 19:05, 6 April 2010 (diff | hist) (+60) ToDo
- 17:42, 6 April 2010 (diff | hist) (+88) Main Page
- 17:14, 6 April 2010 (diff | hist) (+1) Tutorial
- 17:14, 6 April 2010 (diff | hist) (+97) Tutorial
- 15:33, 6 April 2010 (diff | hist) (-8) PyMOL Python Interface (current)
- 14:34, 6 April 2010 (diff | hist) (0) Tutorial:Getting started: Compiling your own programs in MSL (current)
- 15:32, 5 April 2010 (diff | hist) (+4) Tutorial:OptionParser (current)
- 15:31, 5 April 2010 (diff | hist) (-9) Tutorial:OptionParser
- 15:31, 5 April 2010 (diff | hist) (+9) Tutorial:OptionParser
- 15:30, 5 April 2010 (diff | hist) (+14) Tutorial:OptionParser (→Program description)
- 15:30, 5 April 2010 (diff | hist) (+2,690) Tutorial:OptionParser (→Program description)
- 15:19, 5 April 2010 (diff | hist) (+403) Tutorial:OptionParser
- 15:14, 5 April 2010 (diff | hist) (+688) N Tutorial:OptionParser (Created page with 'This is an example of how to add and use the MSL command-line parser ( '''OptionParser object''' ). <font color="red"> WARNING: Tutorial writing i…')
- 15:10, 5 April 2010 (diff | hist) (+26) Tutorial
- 15:02, 2 April 2010 (diff | hist) (+39) Tutorial
- 15:01, 2 April 2010 (diff | hist) (+239) Tutorial
- 14:50, 2 April 2010 (diff | hist) (-2) Tutorial
- 14:50, 2 April 2010 (diff | hist) (+71) Tutorial
- 22:54, 1 April 2010 (diff | hist) (+25) Main Page (→Main development team:)
- 22:52, 1 April 2010 (diff | hist) (-127) Tutorial:Using regular expression: Selecting sequence motifs of a Chain (current)
- 22:50, 1 April 2010 (diff | hist) (+1) Tutorial:Using regular expression: Selecting sequence motifs of a Chain (→To run the program)
- 22:50, 1 April 2010 (diff | hist) (+525) Tutorial:Using regular expression: Selecting sequence motifs of a Chain
- 22:28, 1 April 2010 (diff | hist) (+136) Tutorial:Molecular alignments (→Program description)
- 22:27, 1 April 2010 (diff | hist) (0) m Tutorial:Molecular alignments (→Program description)
- 22:25, 1 April 2010 (diff | hist) (-127) Tutorial:Molecular alignments
- 22:22, 1 April 2010 (diff | hist) (+106) Tutorial:Molecular alignments (→Program description)
- 22:21, 1 April 2010 (diff | hist) (+15) Tutorial:Molecular alignments
- 22:21, 1 April 2010 (diff | hist) (+456) Tutorial:Molecular alignments (→Program description)
- 22:16, 1 April 2010 (diff | hist) (+2,334) Tutorial:Molecular alignments (→Program description)
- 21:45, 1 April 2010 (diff | hist) (0) Tutorial
- 21:44, 1 April 2010 (diff | hist) (+4) Tutorial
- 21:43, 1 April 2010 (diff | hist) (+161) Tutorial
- 22:43, 31 March 2010 (diff | hist) (+1,184) N Tutorial:Molecular alignments (Created page with 'This is an example on how to align whole structures or parts of structures in MSL. This tutorial explains functions in the '''Transform''' object. <…')
- 22:39, 31 March 2010 (diff | hist) (+48) Tutorial
- 22:38, 31 March 2010 (diff | hist) (-11) Tutorial
- 22:38, 31 March 2010 (diff | hist) (+32) Tutorial
- 22:35, 31 March 2010 (diff | hist) (+252) Tutorial:Using regular expression: Selecting sequence motifs of a Chain
- 22:32, 31 March 2010 (diff | hist) (+99) Tutorial:Using regular expression: Selecting sequence motifs of a Chain (→Program description)
- 22:31, 31 March 2010 (diff | hist) (+991) Tutorial:Using regular expression: Selecting sequence motifs of a Chain
- 22:25, 31 March 2010 (diff | hist) (+49) Tutorial:Using regular expression: Selecting sequence motifs of a Chain
- 22:24, 31 March 2010 (diff | hist) (-49) Tutorial:Using regular expression: Selecting sequence motifs of a Chain
- 22:23, 31 March 2010 (diff | hist) (+1,002) N Tutorial:Using regular expression: Selecting sequence motifs of a Chain (Created page with 'This is an example on how to select sequence motifs from '''Chain]''' objects. A '''[[MSL Objects:Chain|Chain object''' versus a '''[[MSL Objects:System|Sy…')
- 21:44, 31 March 2010 (diff | hist) (+78) Tutorial
- 19:32, 31 March 2010 (diff | hist) (+18) MSL Programs
- 17:05, 31 March 2010 (diff | hist) (+465) MSL Programs:getDihedrals (→Options) (current)
- 17:04, 31 March 2010 (diff | hist) (+3) MSL Programs:getDihedrals (→Examples)
- 16:57, 31 March 2010 (diff | hist) (+1,083) MSL Programs:getDihedrals (→Examples)
- 16:44, 31 March 2010 (diff | hist) (+111) MSL Programs:getDihedrals
- 16:41, 31 March 2010 (diff | hist) (-1) MSL Programs:getDihedrals (→Options)
- 16:40, 31 March 2010 (diff | hist) (+1,542) N MSL Programs:getDihedrals (Created page with '==getDihedrals== A program to print out the dihedral angles of an input structure. Prints out backbone angles (phi/psi) and side chain angles (chi1-4). Optionally, will analyz…')
- 16:34, 31 March 2010 (diff | hist) (+155) MSL Programs
- 22:02, 23 March 2010 (diff | hist) (+2) Tutorial:Selecting subsets of atoms (→Background) (current)
- 22:02, 23 March 2010 (diff | hist) (+35) Tutorial:Selecting subsets of atoms
- 22:01, 23 March 2010 (diff | hist) (-1,373) Tutorial:Selecting subsets of atoms (→Program description)
- 21:24, 23 March 2010 (diff | hist) (-552) Tutorial:Selecting subsets of atoms (→Program description)
- 21:22, 23 March 2010 (diff | hist) (+3,055) Tutorial:Selecting subsets of atoms (→Program description)
- 21:07, 23 March 2010 (diff | hist) (+66) Tutorial
- 20:53, 23 March 2010 (diff | hist) (+91) Tutorial:Selecting subsets of atoms
- 20:52, 23 March 2010 (diff | hist) (-22) Tutorial:Selecting subsets of atoms (→Selection By Name:)
- 20:51, 23 March 2010 (diff | hist) (+319) Tutorial:Selecting subsets of atoms
- 20:47, 23 March 2010 (diff | hist) (-4,944) Tutorial:Selecting subsets of atoms
- 20:16, 23 March 2010 (diff | hist) (+6,562) N Tutorial:Selecting subsets of atoms (Created page with '<font color="red">NOTE: TUTORIAL WRITING IN PROGRESS DO NOT FOLLOW THIS</font> This is an example on how to select atoms and residues with MSL, following the example program ex…')
- 20:11, 23 March 2010 (diff | hist) (+110) Tutorial
- 23:13, 12 March 2010 (diff | hist) (+31) Tutorial
- 13:48, 11 March 2010 (diff | hist) (+20) Tutorial
- 13:46, 11 March 2010 (diff | hist) (+123) Tutorial
- 16:23, 4 March 2010 (diff | hist) (+210) MSL Programs:getSurroundingResidues (→getSurroundingResidues) (current)
- 15:03, 4 March 2010 (diff | hist) (+32) MSL Programs:getSurroundingResidues (→getSurroundingResidues)
- 15:02, 4 March 2010 (diff | hist) (-48) MSL Programs:getSurroundingResidues (→Options)
- 15:01, 4 March 2010 (diff | hist) (+6) MSL Programs:getSurroundingResidues (→Options)
- 15:01, 4 March 2010 (diff | hist) (+1,528) N MSL Programs:getSurroundingResidues (Created page with '==getSurroundingResidues== A program to select all the residues around a given atom type from a database of pdb files. ==Options== --pdblist List of pro…')
- 14:53, 4 March 2010 (diff | hist) (+64) MSL Programs
- 04:55, 26 February 2010 (diff | hist) (+3) MSL Programs:getSelection (current)
- 04:54, 26 February 2010 (diff | hist) (+138) MSL Programs:getSelection
- 19:58, 18 February 2010 (diff | hist) (-17) Main Page (→Reference)
- 19:57, 18 February 2010 (diff | hist) (+80) Main Page (→Reference)
- 16:43, 17 February 2010 (diff | hist) (+14) PyMOL Python Interface (→Install PythonMSL plugin)
- 16:42, 17 February 2010 (diff | hist) (+130) PyMOL Python Interface (→Install PythonMSL plugin)
- 16:39, 17 February 2010 (diff | hist) (+16) Main Page (→Documentation)
- 16:28, 17 February 2010 (diff | hist) (+258) PyMOL Python Interface
- 16:26, 17 February 2010 (diff | hist) (+478) N PyMOL Python Interface (Created page with '== Install PythonMSL plugin == #Install PyMOL by going here: http://www.pymol.org/ #First you need to make the PythonMSL.so library ( Pre-compiled libraries should be available i…')
- 16:21, 17 February 2010 (diff | hist) (+93) Main Page (→Documentation)
- 16:35, 16 February 2010 (diff | hist) (+5) MSL Programs:getSelection (→Options)
- 15:51, 16 February 2010 (diff | hist) (+2) MSL by example
- 15:51, 16 February 2010 (diff | hist) (+543) N MSL by example (Created page with '== Regular Expressions == // Generic string matching string regExpression = "^CLUSTAL W (\\S+)\\s+([\\S\\s]+)$"; string lineToMatch="CLUSTAL W 2.1 multiple sequence alignment…')
- 05:48, 16 February 2010 (diff | hist) (-3) Main Page (→Distributed Programs)
- 05:48, 16 February 2010 (diff | hist) (+159) N GetSelections (Created page with '==getSelection== A simple program to take a protein structure file and execute MSL selections (very similar in structure to PyMOL selections). ==Examples==') (current)
- 05:44, 16 February 2010 (diff | hist) (+49) Main Page
- 04:31, 16 February 2010 (diff | hist) (0) Main Page
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