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- Tutorial:Getting started: Compiling MSL
- Tutorial:Getting started: Compiling MSL with external libraries
- Tutorial:Getting started: Compiling your own programs in MSL
- Tutorial:Getting started: Downloading MSL
- Tutorial:Looping over Chains, Residues, Atoms in the System
- Tutorial:Measuring distances, angles, dihedrals
- Tutorial:Molecular Object Getters
- Tutorial:Molecular alignments
- Tutorial:OptionParser
- Tutorial:Passing atoms between objects: the AtomPointerVector
- Tutorial:Reading a PDB file with the complex molecular object: the System
- Tutorial:Reading a PDB file with the simpler molecular object: the AtomContainer
- Tutorial:Selecting subsets of atoms
- Tutorial:Using regular expression: Selecting sequence motifs of a Chain
- Tutorial: Download CHARMM topology and parameter files