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- MSL Objects:RotamerLibraryBuilder (19:08, 16 March 2010)
- MSL Objects:RotamerLibraryReader (19:08, 16 March 2010)
- MSL Objects:RotamerLibraryWriter (19:08, 16 March 2010)
- MSL Objects:SasaAtom (19:08, 16 March 2010)
- MSL Objects:SasaCalculator (19:08, 16 March 2010)
- MSL Objects:Selectable (19:08, 16 March 2010)
- MSL Objects:SelfPairManager (19:08, 16 March 2010)
- MSL Objects:SphericalPoint (19:08, 16 March 2010)
- MSL Objects:SurfaceAreaAndVolume (19:08, 16 March 2010)
- MSL Objects:SurfaceSphere (19:08, 16 March 2010)
- MSL Objects:Symmetry (19:08, 16 March 2010)
- MSL Objects:SystemRotamerLoader (19:08, 16 March 2010)
- MSL Objects:TBDReader (19:08, 16 March 2010)
- MSL Objects:ThreeBodyInteraction (19:08, 16 March 2010)
- MSL Objects:Timer (19:08, 16 March 2010)
- MSL Objects:Transforms (19:08, 16 March 2010)
- MSL Objects:Tree (19:09, 16 March 2010)
- MSL Objects:TwoBodyDistanceDependentPotentialTable (19:09, 16 March 2010)
- MSL Objects:TwoBodyInteraction (19:09, 16 March 2010)
- MSL Objects:UserDefinedEnergy (19:09, 16 March 2010)
- MSL Objects:UserDefinedEnergySetBuilder (19:09, 16 March 2010)
- MSL Objects:UserDefinedInteraction (19:09, 16 March 2010)
- MSL Objects:Writer (19:09, 16 March 2010)
- MSL Objects:release (19:09, 16 March 2010)
- MSL Objects:triple (19:09, 16 March 2010)
- MSL Objects (19:15, 16 March 2010)
- MSL Objects:CharmmEEF1ParameterReader (19:16, 16 March 2010)
- MSL Objects:CharmmEEF1Interaction (19:16, 16 March 2010)
- MSL Objects:CharmmEEF1RefInteraction (19:16, 16 March 2010)
- MSL Objects:OneBodyInteraction (19:17, 16 March 2010)
- MSL Objects:AtomContainer (00:14, 17 March 2010)
- Tutorial:Reading a PDB file with the simpler molecular object: the AtomContainer (13:45, 18 March 2010)
- Tutorial:Reading a PDB file with the complex molecular object: the System (13:47, 18 March 2010)
- Tutorial:Passing atoms between objects: the AtomPointerVector (03:43, 20 March 2010)
- Tutorial:Selecting subsets of atoms (22:02, 23 March 2010)
- MSL Programs:getDihedrals (17:05, 31 March 2010)
- Tutorial:Using regular expression: Selecting sequence motifs of a Chain (22:52, 1 April 2010)
- MSL Objects:EnergySet (20:55, 2 April 2010)
- Tutorial:OptionParser (15:32, 5 April 2010)
- Tutorial:Getting started: Compiling your own programs in MSL (14:34, 6 April 2010)
- MSL Objects:CharmmSystemBuilder (15:18, 6 April 2010)
- PyMOL Python Interface (15:33, 6 April 2010)
- MSL Objects:System (20:04, 9 April 2010)
- Tutorial:Measuring distances, angles, dihedrals (02:55, 10 April 2010)
- Tutorial:Molecular alignments (22:41, 10 April 2010)
- MSL Objects:PDBWriter (22:24, 29 April 2010)
- Tutorial::CoiledCoils Bundles (16:12, 16 May 2010)
- Tutorial::Mutating Residues (04:02, 31 August 2010)
- Tutorial:Looping over Chains, Residues, Atoms in the System (00:19, 23 February 2011)
- Tests (19:56, 8 March 2011)