Difference between revisions of "Tutorial:Getting started: Downloading MSL"

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'''MSL''' is open source software distributed under the terms of the GNU Lesser General Public.
 
'''MSL''' is open source software distributed under the terms of the GNU Lesser General Public.
  
MSL is available from SourceForge, at [https://sourceforge.net/projects/mslib/ the project page] (stable releases) and at the [http://mslib.svn.sourceforge.net/ SVN repository] (stable, betas, development version).
+
MSL is available from SourceForge, at [https://sourceforge.net/projects/mslib/ the project page] (stable releases) and at the [http://sourceforge.net/p/mslib/code/HEAD/tree/ SVN repository] (stable, betas, development version).
  
==== Version 1.1 released (04/03/2013) ====
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===Download links===
'''New Features'''
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* '''v.1.1, stable release, created Apr 3, 2013, last update (v.1.1.0.9) Feb 11, 2014'''
* Added IMM1 solvation model
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** Download a tar ball (.tgz file) from the SourceForge MSL web site '''[http://sourceforge.net/projects/mslib/files/v.1.1/mslib-1.0.0.9.tgz/download mslib-1.1.0.9.tgz]'''
* Added a facility to temporarily hide identities (amini acid types) at positions that contain more than one identity
 
* Initial implementation of clustering algorithms (SingleLinkage, Average-Linkage, Complete-Linkage and PAM/Kmedoids) in src/Clustering.h
 
* Object for fitting a coiled coil to parameters, in src/CoiledCoilFitter.h
 
  
'''Bug fixes'''
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* '''v.1.0, old release (bug fixes back-ported), created Jul 8, 2012, last update (v.1.0.0.14) Feb 11, 2014'''
* Fixed bug with linked position during on-the-fly energy computation
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** Download a tar ball (.tgz file) from the SourceForge MSL web site '''[http://sourceforge.net/projects/mslib/files/v.1.0/mslib-1.0.0.14.tgz/download mslib-1.0.0.14.tgz]'''
* Fixed bugs in the implementation of SCWRL4 hydrogen bond
 
  
===Download links===
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* '''Development version (trunk)'''
* '''v.1.1 (v.1.1.0.0), stable release'''
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** Download a snapshot from the SourceForge SVN repository at '''[http://sourceforge.net/p/mslib/code/HEAD/tree/trunk/ http://sourceforge.net/p/mslib/code/HEAD/tree/trunk/]'''
** Download a tar ball (.tgz file) from the SourceForge MSL page '''[http://sourceforge.net/projects/mslib/files/v.1.1/mslib-1.1.0.0.tgz http://sourceforge.net/projects/mslib/files/v.1.1/mslib-1.1.0.0.tgz]'''
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** ... or check out the trunk using Subversion (snv) with the following command (the command will create a subdirectory mslib/trunk)
** ...or check out the v.1.1 branch using Subversion (svn) with the following command
 
 
<source lang="text">
 
<source lang="text">
svn co  https://mslib.svn.sourceforge.net/svnroot/mslib/branches/v.1.1
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svn checkout svn://svn.code.sf.net/p/mslib/code/trunk mslib/trunk
 
</source>
 
</source>
  
* '''v.1.0 (v.1.0.0.9), old release (bug fixes back-ported)'''
+
To check out a specific version, you may want to first list all the tags via:
** Download a tar ball (.tgz file) from the SourceForge MSL page '''[http://sourceforge.net/projects/mslib/files/v.1.0/mslib-1.0.0.9.tgz http://sourceforge.net/projects/mslib/files/v.1.0/mslib-1.0.0.9.tgz]'''
 
** ...or check out the v.1.0 branch using Subversion (svn) with the following command
 
 
<source lang="text">
 
<source lang="text">
svn co  https://mslib.svn.sourceforge.net/svnroot/mslib/branches/v.1.0
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svn ls -v ^/tags
 
</source>
 
</source>
  
* '''Development version (trunk)'''
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Then checkout the revision number (e.g. 1765) via:
** Download a tar ball (.tgz file) from the SourceForge SVN repository '''[http://mslib.svn.sourceforge.net/viewvc/mslib/trunk/?view=tar http://mslib.svn.sourceforge.net/viewvc/mslib/trunk/?view=tar]'''
 
** ... or check out the trunk using Subversion (snv) with the following command
 
 
<source lang="text">
 
<source lang="text">
svn co  https://mslib.svn.sourceforge.net/svnroot/mslib/trunk
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svn checkout -r 1765 svn://svn.code.sf.net/p/mslib/code/trunk mslib/trunk
 
</source>
 
</source>
 
 
For compiling instructions refer to the [[Tutorial]] page.
 
For compiling instructions refer to the [[Tutorial]] page.
  
 
'''NOTE''': by default, MSL assumes that you have installed [http://www.gnu.org/software/gsl GSL].  We highly recommend that you install [http://www.gnu.org/software/gsl GSL] prior to MSL compilation.
 
'''NOTE''': by default, MSL assumes that you have installed [http://www.gnu.org/software/gsl GSL].  We highly recommend that you install [http://www.gnu.org/software/gsl GSL] prior to MSL compilation.
 +
 +
----
 +
 +
===History===
 +
 +
==== Version 1.1, released 3 April, 2013 ====
 +
'''New Features'''
 +
* Added IMM1 solvation model
 +
* Added a facility to temporarily hide identities (amini acid types) at positions that contain more than one identity
 +
* Initial implementation of clustering algorithms (SingleLinkage, Average-Linkage, Complete-Linkage and PAM/Kmedoids) in src/Clustering.h
 +
* Object for fitting a coiled coil to parameters, in src/CoiledCoilFitter.h
 +
 +
'''Bug fixes'''
 +
* Fixed bug with linked position during on-the-fly energy computation
 +
* Fixed bugs in the implementation of SCWRL4 hydrogen bond
 +
 +
==== Version 1.0,released 8 July, 2013 ====
 +
'''First release'''
  
  

Latest revision as of 17:17, 6 August 2015

MSL is open source software distributed under the terms of the GNU Lesser General Public.

MSL is available from SourceForge, at the project page (stable releases) and at the SVN repository (stable, betas, development version).

Download links

  • v.1.1, stable release, created Apr 3, 2013, last update (v.1.1.0.9) Feb 11, 2014
  • v.1.0, old release (bug fixes back-ported), created Jul 8, 2012, last update (v.1.0.0.14) Feb 11, 2014
  • Development version (trunk)
svn checkout svn://svn.code.sf.net/p/mslib/code/trunk mslib/trunk

To check out a specific version, you may want to first list all the tags via:

svn ls -v ^/tags

Then checkout the revision number (e.g. 1765) via:

svn checkout -r 1765 svn://svn.code.sf.net/p/mslib/code/trunk mslib/trunk

For compiling instructions refer to the Tutorial page.

NOTE: by default, MSL assumes that you have installed GSL. We highly recommend that you install GSL prior to MSL compilation.


History

Version 1.1, released 3 April, 2013

New Features

  • Added IMM1 solvation model
  • Added a facility to temporarily hide identities (amini acid types) at positions that contain more than one identity
  • Initial implementation of clustering algorithms (SingleLinkage, Average-Linkage, Complete-Linkage and PAM/Kmedoids) in src/Clustering.h
  • Object for fitting a coiled coil to parameters, in src/CoiledCoilFitter.h

Bug fixes

  • Fixed bug with linked position during on-the-fly energy computation
  • Fixed bugs in the implementation of SCWRL4 hydrogen bond

Version 1.0,released 8 July, 2013

First release



Back to the tutorial page