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- MSL Objects:Enumerator
- MSL Objects:EnvironmentDatabase
- MSL Objects:EnvironmentDescriptor
- MSL Objects:File
- MSL Objects:FourBodyInteraction
- MSL Objects:Frame
- MSL Objects:GSLMinimizer
- MSL Objects:HBond LJGaussianInteraction
- MSL Objects:Hash
- MSL Objects:Helanal
- MSL Objects:HelixFusion
- MSL Objects:HelixGenerator
- MSL Objects:IcEntry
- MSL Objects:IcTable
- MSL Objects:Interaction
- MSL Objects:InterfaceResidueDescriptor
- MSL Objects:Line
- MSL Objects:LinearProgrammingOptimization
- MSL Objects:LogicalParser
- MSL Objects:MIDReader