Difference between revisions of "Tutorial:Getting started: Downloading MSL"
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'''MSL''' is open source software distributed under the terms of the GNU Lesser General Public. | '''MSL''' is open source software distributed under the terms of the GNU Lesser General Public. | ||
| − | MSL is available from SourceForge, at [https://sourceforge.net/projects/mslib/ the project page] (stable releases) and at the [http:// | + | MSL is available from SourceForge, at [https://sourceforge.net/projects/mslib/ the project page] (stable releases) and at the [http://sourceforge.net/p/mslib/code/HEAD/tree/ SVN repository] (stable, betas, development version). |
| − | === | + | ===Download links=== |
| − | ''' | + | * '''v.1.1, stable release, created Apr 3, 2013, last update (v.1.1.0.9) Feb 11, 2014''' |
| − | * | + | ** Download a tar ball (.tgz file) from the SourceForge MSL web site '''[http://sourceforge.net/projects/mslib/files/v.1.1/mslib-1.0.0.9.tgz/download mslib-1.1.0.9.tgz]''' |
| − | * | ||
| − | |||
| − | |||
| − | ''' | + | * '''v.1.0, old release (bug fixes back-ported), created Jul 8, 2012, last update (v.1.0.0.14) Feb 11, 2014''' |
| − | * | + | ** Download a tar ball (.tgz file) from the SourceForge MSL web site '''[http://sourceforge.net/projects/mslib/files/v.1.0/mslib-1.0.0.14.tgz/download mslib-1.0.0.14.tgz]''' |
| − | |||
| − | + | * '''Development version (trunk)''' | |
| − | * ''' | + | ** Download a snapshot from the SourceForge SVN repository at '''[http://sourceforge.net/p/mslib/code/HEAD/tree/trunk/ http://sourceforge.net/p/mslib/code/HEAD/tree/trunk/]''' |
| − | ** Download a | + | ** ... or check out the trunk using Subversion (snv) with the following command (the command will create a subdirectory mslib/trunk) |
| − | ** ...or check out the | ||
<source lang="text"> | <source lang="text"> | ||
| − | svn | + | svn checkout svn://svn.code.sf.net/p/mslib/code/trunk mslib/trunk |
</source> | </source> | ||
| − | + | To check out a specific version, you may want to first list all the tags via: | |
| − | |||
| − | |||
<source lang="text"> | <source lang="text"> | ||
| − | svn | + | svn ls -v ^/tags |
</source> | </source> | ||
| − | + | Then checkout the revision number (e.g. 1765) via: | |
| − | |||
| − | |||
<source lang="text"> | <source lang="text"> | ||
| − | svn | + | svn checkout -r 1765 svn://svn.code.sf.net/p/mslib/code/trunk mslib/trunk |
</source> | </source> | ||
| − | |||
For compiling instructions refer to the [[Tutorial]] page. | For compiling instructions refer to the [[Tutorial]] page. | ||
'''NOTE''': by default, MSL assumes that you have installed [http://www.gnu.org/software/gsl GSL]. We highly recommend that you install [http://www.gnu.org/software/gsl GSL] prior to MSL compilation. | '''NOTE''': by default, MSL assumes that you have installed [http://www.gnu.org/software/gsl GSL]. We highly recommend that you install [http://www.gnu.org/software/gsl GSL] prior to MSL compilation. | ||
| + | |||
| + | ---- | ||
| + | |||
| + | ===History=== | ||
| + | |||
| + | ==== Version 1.1, released 3 April, 2013 ==== | ||
| + | '''New Features''' | ||
| + | * Added IMM1 solvation model | ||
| + | * Added a facility to temporarily hide identities (amini acid types) at positions that contain more than one identity | ||
| + | * Initial implementation of clustering algorithms (SingleLinkage, Average-Linkage, Complete-Linkage and PAM/Kmedoids) in src/Clustering.h | ||
| + | * Object for fitting a coiled coil to parameters, in src/CoiledCoilFitter.h | ||
| + | |||
| + | '''Bug fixes''' | ||
| + | * Fixed bug with linked position during on-the-fly energy computation | ||
| + | * Fixed bugs in the implementation of SCWRL4 hydrogen bond | ||
| + | |||
| + | ==== Version 1.0,released 8 July, 2013 ==== | ||
| + | '''First release''' | ||
Latest revision as of 17:17, 6 August 2015
MSL is open source software distributed under the terms of the GNU Lesser General Public.
MSL is available from SourceForge, at the project page (stable releases) and at the SVN repository (stable, betas, development version).
Contents
Download links
- v.1.1, stable release, created Apr 3, 2013, last update (v.1.1.0.9) Feb 11, 2014
- Download a tar ball (.tgz file) from the SourceForge MSL web site mslib-1.1.0.9.tgz
- v.1.0, old release (bug fixes back-ported), created Jul 8, 2012, last update (v.1.0.0.14) Feb 11, 2014
- Download a tar ball (.tgz file) from the SourceForge MSL web site mslib-1.0.0.14.tgz
- Development version (trunk)
- Download a snapshot from the SourceForge SVN repository at http://sourceforge.net/p/mslib/code/HEAD/tree/trunk/
- ... or check out the trunk using Subversion (snv) with the following command (the command will create a subdirectory mslib/trunk)
svn checkout svn://svn.code.sf.net/p/mslib/code/trunk mslib/trunkTo check out a specific version, you may want to first list all the tags via:
svn ls -v ^/tagsThen checkout the revision number (e.g. 1765) via:
svn checkout -r 1765 svn://svn.code.sf.net/p/mslib/code/trunk mslib/trunkFor compiling instructions refer to the Tutorial page.
NOTE: by default, MSL assumes that you have installed GSL. We highly recommend that you install GSL prior to MSL compilation.
History
Version 1.1, released 3 April, 2013
New Features
- Added IMM1 solvation model
- Added a facility to temporarily hide identities (amini acid types) at positions that contain more than one identity
- Initial implementation of clustering algorithms (SingleLinkage, Average-Linkage, Complete-Linkage and PAM/Kmedoids) in src/Clustering.h
- Object for fitting a coiled coil to parameters, in src/CoiledCoilFitter.h
Bug fixes
- Fixed bug with linked position during on-the-fly energy computation
- Fixed bugs in the implementation of SCWRL4 hydrogen bond
Version 1.0,released 8 July, 2013
First release
